STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4900PFAM: Propeptide, PepSY amd peptidase M4; KEGG: rpc:RPC_4933 propeptide, PepSY amd peptidase M4. (121 aa)    
Predicted Functional Partners:
RPE_4898
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4931 periplasmic sensor signal transduction histidine kinase.
 
  
 0.954
RPE_4899
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4932 two component transcriptional regulator, winged helix family.
 
  
 0.872
RPE_3875
KEGG: rpc:RPC_3619 hypothetical protein.
  
     0.656
RPE_2722
PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like.
  
     0.605
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
       0.572
RPE_4901
PFAM: cytochrome B561; KEGG: rpd:RPD_0923 cytochrome b561.
       0.516
RPE_3125
KEGG: rpb:RPB_3280 hypothetical protein.
  
     0.509
RPE_1965
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_4310 periplasmic sensor signal transduction histidine kinase.
 
  
 0.475
RPE_0203
PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein.
   
    0.412
RPE_2886
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpb:RPB_2711 hypothetical protein.
   
    0.412
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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