STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4909KEGG: bja:blr0529 hypothetical protein. (408 aa)    
Predicted Functional Partners:
RPE_1772
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rpc:RPC_4004 allergen V5/TPX-1 related.
  
    0.501
RPE_4910
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0530 hypothetical protein.
       0.492
RPE_0303
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rpc:RPC_0197 lipolytic enzyme, G-D-S-L.
  
 
 0.437
RPE_4878
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rpc:RPC_4910 lipolytic enzyme, G-D-S-L.
  
 
 0.437
RPE_4879
KEGG: rpc:RPC_4911 hypothetical protein.
  
 
 0.437
RPE_2367
PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: ret:RHE_CH02651 hypothetical protein.
   
 
 0.416
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
  
 0.406
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.