STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4913TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpb:RPB_4703 hypothetical protein. (76 aa)    
Predicted Functional Partners:
RPE_4534
KEGG: rpc:RPC_4464 hypothetical protein.
  
    0.781
RPE_4536
PFAM: NifZ family protein; KEGG: rpc:RPC_4467 NifZ.
  
     0.759
RPE_4526
PFAM: protein of unknown function DUF683; KEGG: rpc:RPC_4456 protein of unknown function DUF683.
  
    0.753
RPE_4538
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_4469 tetratricopeptide TPR_2.
  
     0.745
RPE_4535
PFAM: NifT/FixU family protein; KEGG: rpc:RPC_4466 NifT/FixU.
  
    0.742
RPE_1937
KEGG: rpc:RPC_1839 hypothetical protein.
  
    0.736
RPE_4527
PFAM: protein of unknown function DUF269; KEGG: rpc:RPC_4457 protein of unknown function DUF269.
  
    0.635
RPE_4369
TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: rpc:RPC_4315 nitrogenase-associated protein; Belongs to the ArsC family.
 
     0.613
RPE_3893
PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpd:RPD_0592 aspartate/glutamate/uridylate kinase.
  
     0.586
RPE_1938
PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin.
  
    0.582
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.