STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4917PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein. (240 aa)    
Predicted Functional Partners:
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
 
 0.987
RPE_0807
PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase.
 
 
 0.985
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
 
  
 0.976
RPE_3498
PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein.
 
 
 0.976
RPE_4248
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0851 ATPase.
  
  
 0.797
RPE_4249
PFAM: ABC-2 type transporter; KEGG: dde:Dde_0841 polysaccharide ABC transporter, permease protein.
  
  
 0.795
RPE_1089
PFAM: lipopolysaccharide biosynthesis; KEGG: ppu:PP3127 exopolysaccharide transport protein, putative.
 
 
 0.779
RPE_1093
PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase.
 
  
 0.762
RPE_1088
KEGG: ppu:PP3128 exopolysaccharide biosynthesis/transport protein, putative.
 
 
 0.728
RPE_3504
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein.
 
  
 0.692
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.