STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0004Hypothetical protein. (414 aa)    
Predicted Functional Partners:
RPC_2586
Outer membrane autotransporter barrel.
  
  
 0.852
RPC_4513
ABC transporter related.
 
  
 0.740
RPC_4512
ABC transporter related.
 
  
 0.707
RPC_1821
Conserved hypothetical protein.
   
   0.637
RPC_1822
Phage conserved hypothetical protein BR0599.
   
   0.637
RPC_3369
Amino acid adenylation.
 
  
 0.619
RPC_4511
Secretion protein HlyD.
 
  
 0.575
RPC_3362
Amino acid adenylation.
 
   
 0.554
RPC_2568
Type I secretion outer membrane protein, TolC.
  
  
 0.532
RPC_1813
Phage conserved hypothetical protein, phiE125 gp8.
   
 
 0.489
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.