Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0010FixH. (166 aa)    
Predicted Functional Partners:
RPC_0015
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.989
RPC_0011
4Fe-4S ferredoxin, iron-sulfur binding domain.
 
  
 0.988
RPC_0012
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.986
RPC_0014
Cytochrome c oxidase, cbb3-type, subunit II.
 
 
 0.982
RPC_0009
Copper-translocating P-type ATPase.
 
  
 0.964
RPC_0008
Cytochrome oxidase maturation protein, cbb3-type.
 
  
 0.955
RPC_0013
Cbb3-type cytochrome oxidase component.
  
  
 0.859
RPC_1307
Cytochrome c, class I.
   
 
 0.715
RPC_3730
Cytochrome c, class I.
   
 
 0.715
RPC_0925
Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.699
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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