Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_0104Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (491 aa)    
Predicted Functional Partners:
RPC_3494
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.950
RPC_0070
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.921
RPC_1700
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.911
RPC_0068
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.910
RPC_0254
Acetyl-CoA hydrolase.
  
 
 0.910
RPC_0072
Succinate dehydrogenase subunit C.
   
 
 0.909
RPC_0071
Succinate dehydrogenase subunit D.
   
 
 0.907
RPC_0454
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.907
RPC_3493
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.905
fumC
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.899
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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