Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_0131NUDIX hydrolase. (240 aa)    
Predicted Functional Partners:
RPC_0136
Inositol monophosphatase.
  
    0.786
RPC_0134
Glycosyl transferase, group 1.
  
  
 0.779
RPC_0135
Hypothetical protein.
  
  
 0.779
RPC_0132
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
     
 0.778
RPC_0133
HAD-superfamily hydrolase, subfamily IA, variant 1.
  
    0.777
RPC_0137
Methyltransferase type 11.
       0.773
RPC_0129
Mannosyltransferase-like.
       0.732
RPC_0130
Aminoglycoside phosphotransferase.
       0.732
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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