Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_0200Protein of unknown function UPF0005; Belongs to the BI1 family. (271 aa)    
Predicted Functional Partners:
RPC_0199
Protein of unknown function DUF214.
       0.614
RPC_0201
GCN5-related N-acetyltransferase.
       0.612
RPC_0198
ABC transporter related.
  
    0.593
RPC_0299
Import inner membrane translocase, subunit Tim44.
  
  
 0.573
htpX
HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
  
  
 0.552
htpX-2
HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
  
  
 0.552
RPC_1526
Import inner membrane translocase, subunit Tim44.
   
  
 0.494
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
  
  
 0.493
RPC_0197
Lipolytic enzyme, G-D-S-L.
       0.460
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.450
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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