STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0200Protein of unknown function UPF0005; Belongs to the BI1 family. (271 aa)    
Predicted Functional Partners:
htpX
HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
  
  
 0.548
htpX-2
HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
  
  
 0.548
RPC_0299
Import inner membrane translocase, subunit Tim44.
  
  
 0.543
RPC_0199
Protein of unknown function DUF214.
       0.489
RPC_0201
GCN5-related N-acetyltransferase.
       0.485
RPC_0198
ABC transporter related.
       0.458
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.444
RPC_2472
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
   
 0.428
RPC_4079
Protein of unknown function DUF1013.
  
     0.426
lysS
lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.425
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
Server load: medium (78%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.