Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0340Alpha/beta hydrolase fold. (265 aa)    
Predicted Functional Partners:
RPC_3363
AMP-dependent synthetase and ligase.
  
 0.807
RPC_3369
Amino acid adenylation.
  
 
 0.730
RPC_0714
Conserved hypothetical protein.
  
     0.670
RPC_4223
Hypothetical protein.
 
    0.644
RPC_2783
ETC complex I subunit conserved region.
  
     0.625
RPC_0077
Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG).
  
     0.559
RPC_3035
Beta-ketoacyl synthase.
  
 0.540
RPC_3401
ATP12 ATPase.
  
     0.536
RPC_0539
Protein of unknown function DUF29.
    
  0.497
RPC_3036
Amino acid adenylation.
  
 0.496
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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