STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0473Transcriptional regulator, XRE family. (138 aa)    
Predicted Functional Partners:
RPC_0914
Double-transmembrane region-like.
  
   
 0.698
RPC_0286
DNA polymerase III, delta subunit.
  
     0.690
RPC_2672
SmpA/OmlA.
 
     0.683
RPC_0912
Conserved hypothetical protein.
  
     0.681
RPC_1385
Signal transduction histidine kinase.
  
     0.672
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.668
RPC_4872
Conserved hypothetical protein.
  
   
 0.650
RPC_4079
Protein of unknown function DUF1013.
  
     0.610
RPC_0915
DUF58.
  
     0.609
RPC_0896
HAD-superfamily hydrolase, subfamily IIA.
  
     0.586
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.