Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_0502Diguanylate cyclase/phosphodiesterase. (574 aa)    
Predicted Functional Partners:
RPC_1355
Hpt sensor hybrid histidine kinase.
 
 
 0.941
RPC_3798
Hpt sensor hybrid histidine kinase.
  
  
 0.903
RPC_4509
Multi-sensor hybrid histidine kinase.
  
 
 0.897
RPC_0283
Diguanylate cyclase.
 
  
 0.882
RPC_1464
Periplasmic sensor diguanylate cyclase/phosphodiesterase.
 
  
0.842
RPC_1252
Transcriptional regulator, AraC family.
  
 
 0.813
RPC_2100
MotA/TolQ/ExbB proton channel.
 
  
 0.765
RPC_0315
Multi-sensor hybrid histidine kinase.
 
 
 0.746
RPC_1734
Diguanylate cyclase/phosphodiesterase.
 
 
0.745
RPC_0789
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.744
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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