Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPC_0315 | RPC_0542 | Multi-sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.935 |
RPC_0315 | RPC_0852 | Multi-sensor hybrid histidine kinase. | Enoyl-CoA hydratase/isomerase. | 0.696 |
RPC_0315 | RPC_1355 | Multi-sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.979 |
RPC_0315 | RPC_3363 | Multi-sensor hybrid histidine kinase. | AMP-dependent synthetase and ligase. | 0.657 |
RPC_0315 | RPC_3369 | Multi-sensor hybrid histidine kinase. | Amino acid adenylation. | 0.699 |
RPC_0315 | RPC_4823 | Multi-sensor hybrid histidine kinase. | Periplasmic sensor hybrid histidine kinase. | 0.931 |
RPC_0542 | RPC_0315 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.935 |
RPC_0542 | RPC_0852 | PAS/PAC sensor hybrid histidine kinase. | Enoyl-CoA hydratase/isomerase. | 0.696 |
RPC_0542 | RPC_1355 | PAS/PAC sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.975 |
RPC_0542 | RPC_3363 | PAS/PAC sensor hybrid histidine kinase. | AMP-dependent synthetase and ligase. | 0.657 |
RPC_0542 | RPC_3369 | PAS/PAC sensor hybrid histidine kinase. | Amino acid adenylation. | 0.699 |
RPC_0542 | RPC_4823 | PAS/PAC sensor hybrid histidine kinase. | Periplasmic sensor hybrid histidine kinase. | 0.931 |
RPC_0848 | RPC_0849 | Xanthine dehydrogenase, molybdenum binding subunit apoprotein. | Molybdopterin dehydrogenase, FAD-binding. | 0.997 |
RPC_0848 | RPC_0851 | Xanthine dehydrogenase, molybdenum binding subunit apoprotein. | AMP-dependent synthetase and ligase. | 0.989 |
RPC_0848 | RPC_0852 | Xanthine dehydrogenase, molybdenum binding subunit apoprotein. | Enoyl-CoA hydratase/isomerase. | 0.828 |
RPC_0849 | RPC_0848 | Molybdopterin dehydrogenase, FAD-binding. | Xanthine dehydrogenase, molybdenum binding subunit apoprotein. | 0.997 |
RPC_0849 | RPC_0851 | Molybdopterin dehydrogenase, FAD-binding. | AMP-dependent synthetase and ligase. | 0.985 |
RPC_0849 | RPC_0852 | Molybdopterin dehydrogenase, FAD-binding. | Enoyl-CoA hydratase/isomerase. | 0.771 |
RPC_0851 | RPC_0848 | AMP-dependent synthetase and ligase. | Xanthine dehydrogenase, molybdenum binding subunit apoprotein. | 0.989 |
RPC_0851 | RPC_0849 | AMP-dependent synthetase and ligase. | Molybdopterin dehydrogenase, FAD-binding. | 0.985 |
page 1 of 4