Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0900Putative outer-membrane immunogenic protein precursor. (207 aa)    
Predicted Functional Partners:
RPC_3126
Conserved hypothetical protein.
  
     0.765
RPC_0410
Protein of unknown function DUF1150.
  
     0.764
RPC_2614
Invasion associated locus B.
 
     0.758
RPC_2652
Conserved hypothetical protein.
  
     0.749
RPC_4786
Invasion associated locus B.
 
     0.728
RPC_0527
Protein of unknown function DUF949.
  
     0.710
RPC_4024
Conserved hypothetical protein.
  
     0.707
RPC_4328
Conserved hypothetical protein.
  
     0.704
RPC_0752
Conserved hypothetical protein.
  
     0.701
RPC_4120
Protein of unknown function DUF992.
  
     0.682
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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