Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_0968Transglutaminase-like. (270 aa)    
Predicted Functional Partners:
RPC_0967
Transglutaminase-like.
 
     0.944
RPC_1705
Protein of unknown function DUF404.
 
  
 0.850
RPC_1706
Transglutaminase-like.
 
     0.737
RPC_0966
N-formylglutamate amidohydrolase.
 
     0.710
RPC_3157
Protein of unknown function DUF404.
 
    0.710
RPC_1701
Transglutaminase-like.
 
     0.686
RPC_3158
Protein of unknown function DUF403.
 
  
 0.685
RPC_3159
Transglutaminase-like.
 
     0.601
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.