STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1200Extracellular solute-binding protein, family 5. (535 aa)    
Predicted Functional Partners:
RPC_1197
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.921
RPC_1196
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.901
RPC_1198
Peptidase M20.
 
     0.876
RPC_0704
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
  
  
 0.851
RPC_1194
MlrC-like; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.808
RPC_1217
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.798
RPC_2971
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.743
RPC_3489
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.743
RPC_1216
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.738
RPC_1195
Sulfate-transporting ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.690
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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