RPC_1390 protein (Rhodopseudomonas palustris BisB18)

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Predicted Interactions

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Score

RPC_1390

Class I peptide chain release factor. (140 aa)

Predicted Functional Partners:

rplU

0.971

rpmA

0.969

rpsP

0.968

rpsL

0.951

rpsG

0.944

rpmJ

0.940

rplD

0.931

rplM

0.926

rplQ

0.917

rplX

0.915

Your Current Organism:

Rhodopseudomonas palustris BisB18

NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPC_1390	rplD	RPC_1390	RPC_3447	Class I peptide chain release factor.	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.931
RPC_1390	rplM	RPC_1390	RPC_2696	Class I peptide chain release factor.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.926
RPC_1390	rplQ	RPC_1390	RPC_3423	Class I peptide chain release factor.	LSU ribosomal protein L17P.	0.917
RPC_1390	rplU	RPC_1390	RPC_0153	Class I peptide chain release factor.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.971
RPC_1390	rplX	RPC_1390	RPC_3437	Class I peptide chain release factor.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.915
RPC_1390	rpmA	RPC_1390	RPC_0154	Class I peptide chain release factor.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.969
RPC_1390	rpmJ	RPC_1390	RPC_3989	Class I peptide chain release factor.	LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.	0.940
RPC_1390	rpsG	RPC_1390	RPC_3452	Class I peptide chain release factor.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.944
RPC_1390	rpsL	RPC_1390	RPC_3453	Class I peptide chain release factor.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.951
RPC_1390	rpsP	RPC_1390	RPC_0222	Class I peptide chain release factor.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.968
rplD	RPC_1390	RPC_3447	RPC_1390	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Class I peptide chain release factor.	0.931
rplD	rplM	RPC_3447	RPC_2696	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplD	rplQ	RPC_3447	RPC_3423	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L17P.	0.992
rplD	rplU	RPC_3447	RPC_0153	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplD	rplX	RPC_3447	RPC_3437	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
rplD	rpmA	RPC_3447	RPC_0154	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.989
rplD	rpmJ	RPC_3447	RPC_3989	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.	0.989
rplD	rpsG	RPC_3447	RPC_3452	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rplD	rpsL	RPC_3447	RPC_3453	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.998
rplD	rpsP	RPC_3447	RPC_0222	LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.990