STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1899Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
RPC_2555
Protein of unknown function DUF1365.
 
  
 0.883
RPC_2556
FAD dependent oxidoreductase.
 
   
 0.755
RPC_2554
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.670
RPC_4209
Short-chain dehydrogenase/reductase SDR.
  
    0.476
RPC_4216
Short-chain dehydrogenase/reductase SDR.
  
    0.476
RPC_1900
Protein of unknown function DUF892.
       0.451
RPC_2291
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.428
RPC_3739
Major facilitator superfamily MFS_1.
  
 
   0.421
RPC_4685
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.407
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.