Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1900Protein of unknown function DUF892. (164 aa)    
Predicted Functional Partners:
RPC_1730
Protein of unknown function DUF892.
 
  
 0.951
RPC_3623
Protein of unknown function DUF892.
 
  
 0.951
RPC_1470
Protein of unknown function DUF892.
 
  
 0.950
RPC_2470
Conserved hypothetical protein.
 
    0.512
RPC_4600
Late embryogenesis abundant protein.
  
  
 0.466
RPC_3624
Conserved hypothetical protein.
 
  
 0.456
RPC_1899
Conserved hypothetical protein.
       0.451
RPC_1866
Protein of unknown function UPF0118.
  
     0.447
RPC_1231
Short-chain dehydrogenase/reductase SDR.
  
     0.412
RPC_2531
Conserved hypothetical protein.
  
     0.405
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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