STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1908Extracellular solute-binding protein, family 3. (309 aa)    
Predicted Functional Partners:
RPC_1907
Pyrrolo-quinoline quinone.
 
 
 0.992
RPC_1909
Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.
 
  
 0.992
RPC_1910
Methanol dehydrogenase, beta subunit; Catalyzes the oxidation of primary alcohols including methanol.
 
  
 0.991
RPC_1913
MxaA protein, putative.
 
  
 0.987
RPC_1914
Von Willebrand factor, type A.
 
  
  0.987
RPC_1916
Von Willebrand factor, type A.
 
  
  0.987
RPC_1915
Hypothetical protein.
 
  
  0.986
RPC_1917
MxaD protein, putative.
 
  
 0.986
gfa
Glutathione-dependent formaldehyde-activating, GFA; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.
 
  
 0.935
RPC_1912
Conserved hypothetical protein.
 
   
 0.879
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.