Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1959Cobalamin (vitamin B12) biosynthesis CbiM protein. (208 aa)    
Predicted Functional Partners:
RPC_1961
Cobalt ABC transporter CbiQ, permease subunit.
 
 
 0.996
RPC_1962
ABC transporter related.
 
 
 0.992
RPC_1958
Conserved hypothetical protein.
  
 0.989
RPC_1949
Cobalt ABC transporter CbiQ, permease subunit.
 
 
 0.987
RPC_1952
ABC-type Co2+ transport system, periplasmic component.
  
 0.967
RPC_1960
Conserved hypothetical protein.
 
    0.960
RPC_1951
Cobalamin (vitamin B12) biosynthesis CbiM protein.
  
  
 
0.904
RPC_1950
Hypothetical protein.
    0.877
RPC_1067
Cobalt transport protein.
  
  
 0.729
RPC_1883
Cobalamin biosynthesis protein G; CbiG.
  
  
 0.650
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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