STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_1978Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)    
Predicted Functional Partners:
RPC_1977
Putative FecR.
 
 
 0.926
RPC_2904
Putative FecR.
 
 
 0.864
RPC_1976
TonB-dependent siderophore receptor.
 
  
 0.750
RPC_1746
Hypothetical protein.
  
 
 0.721
RPC_2907
Secretin/TonB-like protein.
  
  
 0.681
rpoC
DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.670
RPC_3046
TonB-dependent receptor.
  
  
 0.661
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.645
RPC_2905
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.644
RPC_3613
TonB-dependent siderophore receptor.
 
  
 0.635
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.