Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPC_1995Hypothetical protein. (273 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.870
RPC_2039
Protein of unknown function DUF214.
  
 
 0.503
RPC_2557
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.498
RPC_2568
Type I secretion outer membrane protein, TolC.
 
 
 0.494
RPC_4657
Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.481
RPC_1994
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.452
RPC_1872
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.433
RPC_3370
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.433
RPC_3597
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.433
RPC_4508
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.433
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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