Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPC_19973-hydroxybutyrate dehydrogenase. (259 aa)    
Predicted Functional Partners:
RPC_3386
MaoC-like dehydratase.
 
  0.925
RPC_2780
hydroxymethylglutaryl-CoA lyase.
   
 
 0.918
RPC_0638
butyryl-CoA:acetate CoA transferase.
  
  0.908
RPC_0830
butyryl-CoA:acetate CoA transferase.
  
  0.908
RPC_2004
butyryl-CoA:acetate CoA transferase.
  
  0.908
RPC_3949
butyryl-CoA:acetate CoA transferase.
  
  0.908
RPC_4002
3-hydroxybutyrate dehydrogenase.
  
  
 
0.904
RPC_0637
3-oxoacid CoA-transferase, subunit A.
  
 
  0.902
RPC_0829
3-oxoacid CoA-transferase, subunit A.
  
 
  0.902
RPC_2003
3-oxoacid CoA-transferase, subunit A.
  
 
  0.902
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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