Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_20003-hydroxybutyrate dehydrogenase. (259 aa)    
Predicted Functional Partners:
RPC_3386
MaoC-like dehydratase.
 
  0.925
RPC_3369
Amino acid adenylation.
  
 
 0.775
RPC_3362
Amino acid adenylation.
  
 
 0.724
nuoC-2
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.690
RPC_2001
Citrate transporter.
  
  
 0.640
RPC_2004
butyryl-CoA:acetate CoA transferase.
  
   0.555
RPC_3363
AMP-dependent synthetase and ligase.
  
 
 0.540
RPC_2003
3-oxoacid CoA-transferase, subunit A.
  
    0.524
RPC_2002
3-keto-5-aminohexanoate cleavage enzyme.
  
    0.522
RPC_3368
Amino acid adenylation.
  
 
 0.474
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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