Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPC_2001Citrate transporter. (465 aa)    
Predicted Functional Partners:
RPC_2003
3-oxoacid CoA-transferase, subunit A.
  
  
 0.724
RPC_2002
3-keto-5-aminohexanoate cleavage enzyme.
 
     0.715
RPC_2004
butyryl-CoA:acetate CoA transferase.
  
  
 0.700
RPC_3671
6-phosphogluconate dehydrogenase (decarboxylating).
  
  
 0.654
RPC_2000
3-hydroxybutyrate dehydrogenase.
  
  
 0.640
RPC_0831
Conserved hypothetical protein.
 
  
 0.566
RPC_3674
Gluconate kinase.
  
  
 0.547
RPC_2005
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.466
RPC_1855
Transcriptional regulator, GntR family.
  
  
 0.448
RPC_4343
Pyruvate phosphate dikinase.
   
    0.439
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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