Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_2012Conserved hypothetical protein. (572 aa)    
Predicted Functional Partners:
RPC_1492
Flagellar FlaF.
 
  
 0.957
RPC_2014
Flagellar hook-associated protein.
 
 
 0.949
RPC_0868
Flagellar protein FliS.
  
 
 0.918
RPC_1486
Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.896
RPC_1491
Flagellar FlbT.
 
  
 0.893
RPC_2013
Protein of unknown function DUF1078-like.
 
 
 0.893
RPC_0867
Flagellar hook-associated 2-like; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
 
 0.891
RPC_1485
Protein of unknown function DUF1078-like.
 
 
 0.889
RPC_1517
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.885
RPC_1508
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.863
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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