STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_2020Protein of unknown function DUF6, transmembrane. (321 aa)    
Predicted Functional Partners:
RPC_2021
Conserved hypothetical protein.
  
    0.775
RPC_2019
Transcriptional regulator, GntR family.
 
  
 0.698
RPC_4412
Protein of unknown function DUF6, transmembrane.
  
     0.693
RPC_2022
UBA/THIF-type NAD/FAD binding fold.
  
    0.495
RPC_2025
Ala-tRNA(Pro) hydrolase.
       0.419
RPC_2023
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
  
 0.417
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.