STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_2091FAD linked oxidase-like. (471 aa)    
Predicted Functional Partners:
RPC_2090
Thiamine pyrophosphate enzyme-like TPP-binding.
   
 
 0.896
RPC_4115
L-lactate dehydrogenase (cytochrome).
 
 0.690
RPC_4879
Electron transfer flavoprotein, alpha subunit.
 
 
 0.635
nuoC-2
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.632
RPC_4880
Electron transfer flavoprotein beta-subunit.
 
 
 0.612
RPC_4447
Electron transfer flavoprotein beta-subunit.
 
 
 0.592
RPC_4448
Electron transfer flavoprotein beta-subunit.
 
 
 0.591
RPC_3362
Amino acid adenylation.
  
 
 0.503
RPC_4734
Protein of unknown function DUF224, cysteine-rich region.
  
 0.496
RPC_4730
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.466
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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