Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_2178Extensin-like. (393 aa)    
Predicted Functional Partners:
RPC_4342
Cell wall hydrolase, SleB.
  
     0.654
RPC_2177
Hypothetical protein.
       0.596
RPC_1400
Ribonuclease T2; Belongs to the RNase T2 family.
  
     0.591
RPC_2847
Conserved hypothetical protein.
  
     0.587
RPC_1615
Calcium-binding EF-hand.
  
     0.585
RPC_4859
Conserved hypothetical protein.
  
     0.564
RPC_2890
Lytic transglycosylase, catalytic.
  
     0.559
RPC_4252
Conserved hypothetical protein.
  
    0.542
RPC_1137
Conserved hypothetical protein.
  
     0.529
RPC_4840
Protein of unknown function DUF1007.
  
     0.528
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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