STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_2647Major facilitator superfamily MFS_1. (385 aa)    
Predicted Functional Partners:
RPC_2646
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.847
RPC_3369
Amino acid adenylation.
    
 0.632
RPC_4301
Alkylhydroperoxidase AhpD core; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
    0.577
mntH
NRAMP family Mn2+/Fe2+ transporters; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
    
 0.558
RPC_4823
Periplasmic sensor hybrid histidine kinase.
  
 
 0.528
RPC_3036
Amino acid adenylation.
    
 0.521
RPC_3363
AMP-dependent synthetase and ligase.
    
 0.508
RPC_1069
Conserved hypothetical protein.
  
     0.498
RPC_3362
Amino acid adenylation.
  
  
 0.481
RPC_1060
Malonate decarboxylase gamma subunit.
  
    0.457
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.