Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3003Putative general secretory pathway protein K. (313 aa)    
Predicted Functional Partners:
RPC_3007
General secretion pathway protein G.
 
 
 0.967
RPC_3002
Fimbrial assembly.
 
   
 0.954
RPC_3004
Putative general secretion pathway protein J.
  
 
 0.952
RPC_3006
Putative general secretion pathway protein H precursor.
  
 
 0.951
RPC_3005
Methylation.
  
 
 0.949
RPC_3010
Type II and III secretion system protein.
 
   
 0.895
RPC_3008
Type II secretion system protein.
 
   
 0.854
RPC_3009
Type II secretion system protein E.
 
  
 0.844
RPC_3001
Putative general secretion pathway protein M.
     
 0.825
RPC_2403
S23 ribosomal.
  
 
 0.781
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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