STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3020Putative urea/short-chain amide transport system substrate-binding protein. (412 aa)    
Predicted Functional Partners:
RPC_3021
Response regulator receiver (CheY-like) and ANTAR domain protein.
 
 
 0.988
RPC_3019
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.930
RPC_3018
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.926
RPC_3017
ABC transporter related.
 
   
 0.884
RPC_3016
ABC transporter related.
 
  
 0.883
RPC_1019
ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.852
RPC_3022
Putative aliphatic amidase expression-regulating protein, AmiC.
 
    
0.849
RPC_1697
ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.847
RPC_3015
Acetamidase/Formamidase.
 
     0.844
RPC_3700
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.797
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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