Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3133Type IV pilus assembly PilZ. (204 aa)    
Predicted Functional Partners:
RPC_3130
Conserved hypothetical protein.
 
     0.871
RPC_1456
Hpt protein.
  
     0.771
RPC_3708
Conserved hypothetical protein.
  
     0.770
RPC_3711
Peptidase A24A, prepilin type IV.
  
     0.770
RPC_4438
Conserved hypothetical protein.
  
     0.769
RPC_1748
Twin-arginine translocation pathway signal.
  
     0.766
RPC_3714
Pilus assembly protein CpaD.
  
     0.766
RPC_3715
Putative pilus assembly protein cpaE.
  
     0.756
RPC_3719
Tetratricopeptide TPR_2.
  
     0.754
RPC_4928
Polysaccharide deacetylase.
  
     0.752
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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