Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3231Conserved hypothetical protein. (185 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.944
RPC_2084
Conserved hypothetical protein.
  
     0.758
RPC_2847
Conserved hypothetical protein.
  
     0.758
RPC_4014
Conserved hypothetical protein.
  
     0.734
RPC_4859
Conserved hypothetical protein.
  
     0.723
RPC_4282
Chorismate mutase.
 
     0.709
RPC_0216
Transcription activator, effector binding.
  
     0.704
RPC_2763
Putative outer-membrane protein precursor.
  
     0.701
RPC_1137
Conserved hypothetical protein.
  
     0.681
RPC_1393
Conserved hypothetical protein.
  
     0.672
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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