Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3239Conserved hypothetical protein. (234 aa)    
Predicted Functional Partners:
RPC_3941
Phasin 2.
  
     0.765
RPC_0216
Transcription activator, effector binding.
  
     0.760
RPC_0383
Protein of unknown function UPF0079.
 
   
 0.753
RPC_3134
Transglutaminase-like cysteine peptidase, BTLCP.
  
     0.739
RPC_1410
Conserved hypothetical protein.
  
     0.735
RPC_0417
OstA-like protein.
  
     0.729
RPC_3981
Protein of unknown function DUF1036.
  
     0.707
RPC_4085
Conserved hypothetical protein.
  
     0.703
RPC_2938
Conserved hypothetical protein.
 
    0.687
RPC_4378
Conserved hypothetical protein.
  
     0.683
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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