Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPC_3333Uncharacterised conserved protein UCP032025. (145 aa)    
Predicted Functional Partners:
RPC_3334
Conserved hypothetical protein.
       0.777
RPC_3335
Conserved hypothetical protein.
       0.593
RPC_4416
Uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.499
RPC_4333
Metal dependent phosphohydrolase.
  
     0.491
RPC_0820
Periplasmic sensor signal transduction histidine kinase.
  
     0.489
RPC_0914
Double-transmembrane region-like.
  
     0.486
yacG
Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
  
     0.478
RPC_0460
Conserved hypothetical protein.
  
     0.476
RPC_0746
Conserved hypothetical protein.
  
     0.473
RPC_1414
Protein of unknown function DUF526.
  
     0.469
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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