STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3554Lytic transglycosylase, catalytic. (241 aa)    
Predicted Functional Partners:
RPC_3556
TraF peptidase. Serine peptidase. MEROPS family S26C.
 
     0.737
RPC_3321
Lytic transglycosylase, catalytic.
  
     0.718
RPC_3557
Conserved hypothetical protein.
 
     0.660
RPC_3555
Protein of unknown function DUF736.
 
     0.649
RPC_3553
Conserved hypothetical protein.
 
   
 0.599
RPC_0867
Flagellar hook-associated 2-like; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.584
RPC_3559
Hypothetical protein.
 
     0.559
RPC_4232
ATPase FliI/YscN.
 
  
 0.525
RPC_3913
Conserved hypothetical protein.
  
     0.502
RPC_3904
Conserved hypothetical protein.
 
   
 0.499
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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