STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3978Protein of unknown function DUF882. (541 aa)    
Predicted Functional Partners:
RPC_0374
Beta-lactamase-like.
  
    0.821
RPC_3977
Peptidoglycan-binding domain 1.
 
   
 0.820
RPC_0581
Peptidase U6, penicillin-insensitive murein endopeptidase.
  
   
 0.703
RPC_4271
Conserved hypothetical protein 1620.
  
     0.570
RPC_3148
Conserved hypothetical protein.
  
     0.568
RPC_4296
Beta-lactamase-like.
 
    0.566
RPC_3126
Conserved hypothetical protein.
  
     0.562
RPC_0527
Protein of unknown function DUF949.
  
    0.550
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.510
RPC_0890
Beta-lactamase-like.
  
    0.509
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.