STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrBHomoserine kinase; Belongs to the pseudomonas-type ThrB family. (326 aa)    
Predicted Functional Partners:
RPC_2816
Homoserine dehydrogenase.
 
  
 0.940
RPC_4795
L-threonine synthase.
    
 0.931
rnhA
RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.892
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
     
 0.831
RPC_3735
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.825
RPC_0132
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
   
 
 0.814
RPC_1331
O-acetylhomoserine/O-acetylserine sulfhydrylase.
    
  0.814
RPC_1388
Branched chain amino acid aminotransferase.
   
 
 0.814
RPC_2691
O-acetylhomoserine/O-acetylserine sulfhydrylase.
    
  0.814
RPC_4056
O-acetylhomoserine/O-acetylserine sulfhydrylase.
    
  0.814
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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