STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_4331Glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family. (293 aa)    
Predicted Functional Partners:
RPC_4332
DNA-3-methyladenine glycosylase I.
       0.892
RPC_2506
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
 
 0.625
RPC_2835
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
 
 0.618
RPC_4453
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
 
 0.601
RPC_4330
Dihydroorotase, multifunctional complex type.
       0.598
RPC_4015
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.513
RPC_0787
Conserved hypothetical protein.
  
     0.509
RPC_1410
Conserved hypothetical protein.
  
     0.505
RPC_4333
Metal dependent phosphohydrolase.
  
    0.504
RPC_2573
Cyclase/dehydrase.
  
    0.500
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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