Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_44554Fe-4S ferredoxin, iron-sulfur binding. (104 aa)    
Predicted Functional Partners:
nuoC-2
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
  
 0.995
RPC_4458
Dinitrogenase iron-molybdenum cofactor biosynthesis.
 
  
 0.989
RPC_4459
Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.977
RPC_4460
Nitrogenase MoFe cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.977
RPC_4461
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.976
RPC_3857
NADH dehydrogenase (quinone).
  
 
 0.975
RPC_4454
NifQ.
 
  
 0.970
RPC_4462
Nitrogenase molybdenum-iron protein alpha chain.
 
  
 0.970
RPC_0704
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
 
 0.967
RPC_4472
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.967
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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