STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_4466NifT/FixU. (67 aa)    
Predicted Functional Partners:
RPC_4464
Conserved hypothetical protein.
 
    0.977
RPC_4468
NifZ.
 
  
 0.973
RPC_4467
NifZ.
 
     0.948
RPC_4472
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.911
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.890
RPC_4470
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
  
 0.887
RPC_4469
Tetratricopeptide TPR_2.
 
     0.874
RPC_4465
Conserved hypothetical protein.
 
     0.866
RPC_4457
Protein of unknown function DUF269.
 
    0.863
RPC_4460
Nitrogenase MoFe cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.858
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.