Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPC_4496Conserved hypothetical protein. (68 aa)    
Predicted Functional Partners:
RPC_4495
Hypothetical protein.
       0.773
RPC_4497
Cobyrinic acid a,c-diamide synthase.
       0.773
RPC_4498
Carbon-monoxide dehydrogenase, catalytic subunit.
       0.773
RPC_4499
4Fe-4S ferredoxin, iron-sulfur binding.
       0.737
RPC_4500
Hydrogenase expression/synthesis, HypA.
       0.622
RPC_4494
Transcriptional regulator, Crp/Fnr family.
       0.541
RPC_4493
Hydrogenase accessory protein HypB.
       0.487
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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