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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_4643Formate dehydrogenase delta subunit. (72 aa)    
Predicted Functional Partners:
RPC_4645
Formate dehydrogenase, alpha subunit.
 
 0.999
RPC_4646
NADH dehydrogenase (quinone).
 
 
 0.998
RPC_4647
NADH dehydrogenase (ubiquinone), 24 kDa subunit.
 
 
 0.998
fdhD-2
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.952
RPC_0099
Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.911
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
 0.900
RPC_4498
Carbon-monoxide dehydrogenase, catalytic subunit.
     
  0.900
RPC_4499
4Fe-4S ferredoxin, iron-sulfur binding.
     
  0.900
RPC_4578
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.879
RPC_4648
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.826
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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