Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_4785Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62. (474 aa)    
Predicted Functional Partners:
RPC_4708
Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62.
 
 
0.925
RPC_4784
Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
       0.845
RPC_4786
Invasion associated locus B.
       0.543
RPC_1610
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
   
 0.451
RPC_4839
Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A.
 
   
 0.431
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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