Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPC_4797GCN5-related N-acetyltransferase. (195 aa)    
Predicted Functional Partners:
RPC_4796
Peptidase M16-like; Belongs to the peptidase M16 family.
  
    0.738
RPC_4795
L-threonine synthase.
       0.734
RPC_3369
Amino acid adenylation.
  
  
 0.645
RPC_4798
Conserved hypothetical protein.
       0.634
RPC_3362
Amino acid adenylation.
  
  
 0.621
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.607
RPC_0820
Periplasmic sensor signal transduction histidine kinase.
  
     0.597
RPC_0359
Histidine kinase.
  
     0.534
RPC_4794
Surfeit locus 1.
       0.498
RPC_4793
Protein of unknown function DUF983.
       0.496
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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