Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPC_4841High-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family. (390 aa)    
Predicted Functional Partners:
RPC_4840
Protein of unknown function DUF1007.
   
 0.986
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.845
RPC_4231
Flagellar export FliJ.
  
     0.635
RPC_4786
Invasion associated locus B.
  
   
 0.629
RPC_2650
RDD.
  
     0.619
RPC_4839
Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A.
       0.610
RPC_3126
Conserved hypothetical protein.
  
     0.600
RPC_4085
Conserved hypothetical protein.
  
     0.569
RPC_4328
Conserved hypothetical protein.
  
     0.563
RPC_3148
Conserved hypothetical protein.
  
     0.559
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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