Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0055Hypothetical protein. (120 aa)    
Predicted Functional Partners:
RPD_0054
Enoyl-CoA hydratase.
       0.590
RPD_0056
Integral membrane protein TerC.
       0.508
RPD_0057
Conserved hypothetical protein.
       0.508
RPD_0050
ABC transporter related.
       0.435
RPD_0051
ABC transporter related.
       0.435
RPD_0052
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.435
RPD_0053
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.435
RPD_0058
Tellurite resistance protein-like.
       0.409
RPD_0049
Aldehyde dehydrogenase (acceptor).
       0.405
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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