STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0060Transcriptional regulator, ArsR family. (126 aa)    
Predicted Functional Partners:
RPD_0059
Conserved hypothetical protein.
 
     0.950
RPD_0061
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.680
RPD_0062
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase.
 
     0.639
RPD_2104
Substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.497
RPD_3121
Hypothetical protein.
  
     0.419
RPD_3516
Conserved hypothetical protein.
  
     0.415
RPD_0058
Tellurite resistance protein-like.
       0.413
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.